Mapped reads for uncultivated Herpetosiphon bacterium UBA8869 genome ... - SRA

SRX3576199: Mapped reads for uncultivated Herpetosiphon bacterium UBA8869 genome recovered from SRX200676
1 ILLUMINA (Illumina HiSeq 2000) run: 711,192 spots, 134.9M bases, 46.4Mb downloads

Design: Reads from SRX200676 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA8869 genome.

Submitted by: University of Queensland

Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.

PRJNA417962 • SRP130174 • All experiments • All runs

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Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.

Sample: Uncultivated Herpetosiphon bacterium UBA8869 genome recovered from SRX200676

SAMN08019338 • SRS2846082 • All experiments • All runs

Organism: Herpetosiphon sp.

Library:

Name: UBA8869_library

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 711,192 spots, 134.9M bases, 46.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR6486208	711,192	134.9M	46.4Mb	2018-02-23

ID:: 4961701

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